Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 REXO1L3P-201ENST00000622202 1288 ntBASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 FER1L4-210ENST00000615531 5998 ntBASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 HLA-A-202ENST00000376806 1854 ntBASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4CQ96CF2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 AC091167.2-201ENST00000579581 588 ntBASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 AL513477.1-201ENST00000602865 2407 ntBASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4CQ96CF2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC129492.6-201ENST00000611383 1305 ntBASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC068137.2-201ENST00000605408 478 ntBASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AC092902.6-201ENST00000641783 218 ntBASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4CQ96CF2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms