Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 RARRES2P9-201ENST00000565168 469 ntBASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 AC003101.2-201ENST00000612557 442 ntBASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 AC009118.2-201ENST00000613275 655 ntBASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AC073439.1-201ENST00000624121 1774 ntBASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AC241585.1-201ENST00000433527 519 ntBASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AC018529.1-201ENST00000613063 361 ntBASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AC060834.1-201ENST00000443027 2032 ntBASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.6■□□□□ 0.25
HDDC3Q8N4P3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HDDC3Q8N4P3 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HDDC3Q8N4P3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.58■□□□□ 0.25
HDDC3Q8N4P3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
HDDC3Q8N4P3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HDDC3Q8N4P3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HDDC3Q8N4P3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms