Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 OR7E47P-204ENST00000575924 449 ntBASIC18.92■□□□□ 0.62
ATL3Q6DD88 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 TP73-AS1-207ENST00000624167 988 ntBASIC18.92■□□□□ 0.62
ATL3Q6DD88 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATL3Q6DD88 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.92■□□□□ 0.62
ATL3Q6DD88 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 U82695.1-201ENST00000635752 1889 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 RPS2P28-201ENST00000314255 741 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 PMS2P4-201ENST00000412466 1052 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 AC018712.1-201ENST00000455767 687 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 AL160237.2-201ENST00000556165 472 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 IFNL4P1-201ENST00000607083 540 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 AC005593.1-201ENST00000624894 515 ntBASIC18.91■□□□□ 0.62
ATL3Q6DD88 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.91■□□□□ 0.62
ATL3Q6DD88 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATL3Q6DD88 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 ACTL9-202ENST00000612068 1252 ntBASIC18.9■□□□□ 0.62
ATL3Q6DD88 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATL3Q6DD88 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ATL3Q6DD88 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms