Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 AL365203.3-201ENST00000609742 2057 ntBASIC16.17■□□□□ 0.18
YBX1P67809 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.17■□□□□ 0.18
YBX1P67809 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.17■□□□□ 0.18
YBX1P67809 AC091167.2-201ENST00000579581 588 ntBASIC16.17■□□□□ 0.18
YBX1P67809 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.17■□□□□ 0.18
YBX1P67809 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 AC012569.1-201ENST00000591191 1524 ntBASIC16.17■□□□□ 0.18
YBX1P67809 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.17■□□□□ 0.18
YBX1P67809 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.17■□□□□ 0.18
YBX1P67809 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.17■□□□□ 0.18
YBX1P67809 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
YBX1P67809 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
YBX1P67809 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
YBX1P67809 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 AC022188.1-201ENST00000620960 1664 ntBASIC16.16■□□□□ 0.18
YBX1P67809 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.16■□□□□ 0.18
YBX1P67809 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.16■□□□□ 0.18
YBX1P67809 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.16■□□□□ 0.18
YBX1P67809 PDPK2P-202ENST00000562415 1191 ntBASIC16.16■□□□□ 0.18
YBX1P67809 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
YBX1P67809 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 AC013467.2-201ENST00000605472 835 ntBASIC16.16■□□□□ 0.18
YBX1P67809 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.16■□□□□ 0.18
YBX1P67809 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.16■□□□□ 0.18
YBX1P67809 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.16■□□□□ 0.18
YBX1P67809 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
YBX1P67809 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
YBX1P67809 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
YBX1P67809 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.15■□□□□ 0.18
YBX1P67809 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
YBX1P67809 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
YBX1P67809 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.15■□□□□ 0.18
YBX1P67809 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
YBX1P67809 AC087641.1-201ENST00000557561 1021 ntBASIC16.15■□□□□ 0.18
YBX1P67809 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms