Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.66■□□□□ 0.1
RFX3P48380 AC008667.4-201ENST00000607370 168 ntBASIC15.66■□□□□ 0.1
RFX3P48380 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RFX3P48380 AC004790.2-201ENST00000623588 572 ntBASIC15.66■□□□□ 0.1
RFX3P48380 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 PCDH8P1-201ENST00000428983 2773 ntBASIC15.66■□□□□ 0.1
RFX3P48380 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 AL603756.1-201ENST00000606511 2163 ntBASIC15.66■□□□□ 0.1
RFX3P48380 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
RFX3P48380 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 AC011270.2-201ENST00000624293 2550 ntBASIC15.65■□□□□ 0.1
RFX3P48380 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.65■□□□□ 0.1
RFX3P48380 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 MRPL20P1-201ENST00000400819 433 ntBASIC15.65■□□□□ 0.1
RFX3P48380 IGHV3-65-201ENST00000523210 341 ntBASIC15.65■□□□□ 0.1
RFX3P48380 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 DUX4L17-201ENST00000557360 1267 ntBASIC15.65■□□□□ 0.1
RFX3P48380 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.65■□□□□ 0.1
RFX3P48380 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
RFX3P48380 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
RFX3P48380 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.65■□□□□ 0.1
RFX3P48380 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 CICP6-201ENST00000457191 2729 ntBASIC15.65■□□□□ 0.1
RFX3P48380 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFX3P48380 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.1
RFX3P48380 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.64■□□□□ 0.09
RFX3P48380 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
RFX3P48380 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.64■□□□□ 0.09
RFX3P48380 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.64■□□□□ 0.09
RFX3P48380 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
RFX3P48380 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 AL391005.1-201ENST00000623953 2435 ntBASIC15.64■□□□□ 0.09
RFX3P48380 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 AP002490.2-201ENST00000524791 560 ntBASIC15.64■□□□□ 0.09
RFX3P48380 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.64■□□□□ 0.09
RFX3P48380 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.64■□□□□ 0.09
RFX3P48380 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.64■□□□□ 0.09
RFX3P48380 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.64■□□□□ 0.09
RFX3P48380 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.64■□□□□ 0.09
RFX3P48380 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 AL662844.4-201ENST00000606367 2838 ntBASIC15.64■□□□□ 0.09
RFX3P48380 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFX3P48380 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms