Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.09□□□□□ -0.15
USF1P22415 AC239800.4-201ENST00000603712 296 ntBASIC14.09□□□□□ -0.15
USF1P22415 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.09□□□□□ -0.15
USF1P22415 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.09□□□□□ -0.15
USF1P22415 UXT-AS1-201ENST00000590504 1525 ntBASIC14.09□□□□□ -0.15
USF1P22415 TUBB3P1-201ENST00000405796 1332 ntBASIC14.09□□□□□ -0.15
USF1P22415 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USF1P22415 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
USF1P22415 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
USF1P22415 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
USF1P22415 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.09□□□□□ -0.15
USF1P22415 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
USF1P22415 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.08□□□□□ -0.15
USF1P22415 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
USF1P22415 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.08□□□□□ -0.15
USF1P22415 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
USF1P22415 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.08□□□□□ -0.15
USF1P22415 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
USF1P22415 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
USF1P22415 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
USF1P22415 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.08□□□□□ -0.16
USF1P22415 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.08□□□□□ -0.16
USF1P22415 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 KLF2P3-201ENST00000451977 1087 ntBASIC14.08□□□□□ -0.16
USF1P22415 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 AL009183.1-201ENST00000603760 355 ntBASIC14.08□□□□□ -0.16
USF1P22415 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.08□□□□□ -0.16
USF1P22415 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
USF1P22415 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.08□□□□□ -0.16
USF1P22415 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USF1P22415 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
USF1P22415 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 AL353732.1-201ENST00000569618 1459 ntBASIC14.07□□□□□ -0.16
USF1P22415 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
USF1P22415 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 MIR943-201ENST00000401286 94 ntBASIC14.07□□□□□ -0.16
USF1P22415 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.07□□□□□ -0.16
USF1P22415 FAM58DP-201ENST00000428076 619 ntBASIC14.07□□□□□ -0.16
USF1P22415 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.07□□□□□ -0.16
USF1P22415 AC055876.3-201ENST00000431496 288 ntBASIC14.07□□□□□ -0.16
USF1P22415 SPCS2P4-201ENST00000436160 681 ntBASIC14.07□□□□□ -0.16
USF1P22415 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.07□□□□□ -0.16
USF1P22415 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms