Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MSH3P20585 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MSH3P20585 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 AC006538.1-201ENST00000567905 1585 ntBASIC16.53■□□□□ 0.24
MSH3P20585 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH3P20585 RNU1-129P-201ENST00000384064 167 ntBASIC16.53■□□□□ 0.24
MSH3P20585 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 AC140658.5-201ENST00000438532 169 ntBASIC16.53■□□□□ 0.24
MSH3P20585 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 HLA-J-202ENST00000469281 1241 ntBASIC16.53■□□□□ 0.24
MSH3P20585 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.53■□□□□ 0.24
MSH3P20585 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH3P20585 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.53■□□□□ 0.24
MSH3P20585 U1.21-201ENST00000580816 167 ntBASIC16.53■□□□□ 0.24
MSH3P20585 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 MTDHP5-201ENST00000598980 586 ntBASIC16.53■□□□□ 0.24
MSH3P20585 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH3P20585 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH3P20585 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH3P20585 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
MSH3P20585 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.52■□□□□ 0.24
MSH3P20585 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
MSH3P20585 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH3P20585 PMS2P4-201ENST00000412466 1052 ntBASIC16.52■□□□□ 0.24
MSH3P20585 MCCD1P2-201ENST00000423228 335 ntBASIC16.52■□□□□ 0.24
MSH3P20585 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.52■□□□□ 0.24
MSH3P20585 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.52■□□□□ 0.24
MSH3P20585 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
MSH3P20585 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
MSH3P20585 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH3P20585 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.52■□□□□ 0.23
MSH3P20585 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.52■□□□□ 0.23
MSH3P20585 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
MSH3P20585 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.52■□□□□ 0.23
MSH3P20585 AC092919.2-201ENST00000623631 1645 ntBASIC16.52■□□□□ 0.23
MSH3P20585 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
MSH3P20585 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
MSH3P20585 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 SNX33P1-201ENST00000592116 1762 ntBASIC16.51■□□□□ 0.23
MSH3P20585 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.51■□□□□ 0.23
MSH3P20585 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms