Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDC1P18827 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.82■□□□□ 0.12
SDC1P18827 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SDC1P18827 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.81■□□□□ 0.12
SDC1P18827 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.81■□□□□ 0.12
SDC1P18827 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.81■□□□□ 0.12
SDC1P18827 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 AC079781.3-201ENST00000449110 356 ntBASIC15.81■□□□□ 0.12
SDC1P18827 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.81■□□□□ 0.12
SDC1P18827 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 AC012569.1-201ENST00000591191 1524 ntBASIC15.81■□□□□ 0.12
SDC1P18827 AC020765.3-201ENST00000613051 740 ntBASIC15.81■□□□□ 0.12
SDC1P18827 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.81■□□□□ 0.12
SDC1P18827 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SDC1P18827 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 AC117500.6-201ENST00000624871 588 ntBASIC15.81■□□□□ 0.12
SDC1P18827 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.81■□□□□ 0.12
SDC1P18827 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDC1P18827 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.81■□□□□ 0.12
SDC1P18827 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.8■□□□□ 0.12
SDC1P18827 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SDC1P18827 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.8■□□□□ 0.12
SDC1P18827 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 AL691432.3-201ENST00000621860 400 ntBASIC15.8■□□□□ 0.12
SDC1P18827 FAM215A-202ENST00000632077 792 ntBASIC15.8■□□□□ 0.12
SDC1P18827 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SDC1P18827 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SDC1P18827 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDC1P18827 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 AC010491.1-201ENST00000563101 2797 ntBASIC15.79■□□□□ 0.12
SDC1P18827 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 RPS2P28-201ENST00000314255 741 ntBASIC15.79■□□□□ 0.12
SDC1P18827 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 FAM185BP-201ENST00000443595 716 ntBASIC15.79■□□□□ 0.12
SDC1P18827 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDC1P18827 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.79■□□□□ 0.12
SDC1P18827 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SDC1P18827 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
SDC1P18827 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.79■□□□□ 0.12
SDC1P18827 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms