Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.07■□□□□ 0.32
HMGA1P17096 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGA1P17096 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGA1P17096 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.07■□□□□ 0.32
HMGA1P17096 AC008738.7-201ENST00000609744 511 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 AF228730.6-201ENST00000641497 218 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 AC084121.3-201ENST00000641716 218 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 AC105233.6-201ENST00000642093 218 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 UBALD1-205ENST00000590891 2641 ntBASIC17.06■□□□□ 0.32
HMGA1P17096 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGA1P17096 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
HMGA1P17096 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HMGA1P17096 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HMGA1P17096 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HMGA1P17096 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGA1P17096 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HMGA1P17096 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGA1P17096 SPTLC1P1-201ENST00000447199 261 ntBASIC17.05■□□□□ 0.32
HMGA1P17096 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGA1P17096 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGA1P17096 AC009118.2-201ENST00000613275 655 ntBASIC17.05■□□□□ 0.32
HMGA1P17096 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGA1P17096 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.05■□□□□ 0.32
HMGA1P17096 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGA1P17096 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGA1P17096 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms