Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
CSB-PGBD3P0DP91 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC092068.3-201ENST00000587894 2016 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC022210.1-201ENST00000449856 793 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 SDHAP3-202ENST00000515467 728 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC023310.3-201ENST00000557027 670 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC100756.1-201ENST00000562736 682 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC138749.3-201ENST00000567691 622 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 AC116165.1-201ENST00000611806 668 ntBASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CSB-PGBD3P0DP91 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 AC093724.1-201ENST00000448659 1027 ntBASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 GLI4-203ENST00000517468 963 ntTSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 AC123567.1-201ENST00000548294 1261 ntBASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 5S_rRNA.22-201ENST00000614916 106 ntBASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 AL109936.8-201ENST00000641772 604 ntBASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSB-PGBD3P0DP91 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 AL589987.1-201ENST00000453380 819 ntBASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 CTBP2P3-201ENST00000585629 1255 ntBASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 AL589702.1-201ENST00000641229 1509 ntBASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CSB-PGBD3P0DP91 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 MEP1AP4-201ENST00000423244 1087 ntBASIC21.78■■□□□ 1.08
CSB-PGBD3P0DP91 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms