Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SDC3O75056 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SDC3O75056 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.18■□□□□ 0.18
SDC3O75056 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.18■□□□□ 0.18
SDC3O75056 AL353705.2-201ENST00000428243 662 ntBASIC16.18■□□□□ 0.18
SDC3O75056 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.18■□□□□ 0.18
SDC3O75056 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.18■□□□□ 0.18
SDC3O75056 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.18■□□□□ 0.18
SDC3O75056 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.18■□□□□ 0.18
SDC3O75056 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.18■□□□□ 0.18
SDC3O75056 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
SDC3O75056 AC004233.3-201ENST00000607794 1269 ntBASIC16.18■□□□□ 0.18
SDC3O75056 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.18■□□□□ 0.18
SDC3O75056 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SDC3O75056 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.18■□□□□ 0.18
SDC3O75056 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.17■□□□□ 0.18
SDC3O75056 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.17■□□□□ 0.18
SDC3O75056 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.17■□□□□ 0.18
SDC3O75056 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.17■□□□□ 0.18
SDC3O75056 AC006277.1-201ENST00000624348 1610 ntBASIC16.17■□□□□ 0.18
SDC3O75056 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.17■□□□□ 0.18
SDC3O75056 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SDC3O75056 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.17■□□□□ 0.18
SDC3O75056 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.17■□□□□ 0.18
SDC3O75056 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.17■□□□□ 0.18
SDC3O75056 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.17■□□□□ 0.18
SDC3O75056 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.17■□□□□ 0.18
SDC3O75056 AC124947.2-201ENST00000547118 1133 ntBASIC16.17■□□□□ 0.18
SDC3O75056 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.17■□□□□ 0.18
SDC3O75056 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.17■□□□□ 0.18
SDC3O75056 AC009118.2-201ENST00000613275 655 ntBASIC16.17■□□□□ 0.18
SDC3O75056 SPTSSB-204ENST00000617024 1292 ntBASIC16.17■□□□□ 0.18
SDC3O75056 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.17■□□□□ 0.18
SDC3O75056 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SDC3O75056 TNRC18P3-201ENST00000441896 2691 ntBASIC16.17■□□□□ 0.18
SDC3O75056 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SDC3O75056 PCDHB17P-201ENST00000539533 2393 ntBASIC16.16■□□□□ 0.18
SDC3O75056 AC009053.2-201ENST00000563701 2365 ntBASIC16.16■□□□□ 0.18
SDC3O75056 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
SDC3O75056 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.16■□□□□ 0.18
SDC3O75056 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.16■□□□□ 0.18
SDC3O75056 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 RNA5SP410-201ENST00000516285 106 ntBASIC16.16■□□□□ 0.18
SDC3O75056 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.16■□□□□ 0.18
SDC3O75056 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.16■□□□□ 0.18
SDC3O75056 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.16■□□□□ 0.18
SDC3O75056 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.16■□□□□ 0.18
SDC3O75056 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.16■□□□□ 0.18
SDC3O75056 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
SDC3O75056 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.16■□□□□ 0.18
SDC3O75056 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.16■□□□□ 0.18
SDC3O75056 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SDC3O75056 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SDC3O75056 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SDC3O75056 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms