Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLDN3O15551 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
CLDN3O15551 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLDN3O15551 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 AL031731.1-201ENST00000642131 2094 ntBASIC18.12■□□□□ 0.49
CLDN3O15551 AC004461.1-201ENST00000412461 403 ntBASIC18.12■□□□□ 0.49
CLDN3O15551 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CLDN3O15551 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN3O15551 AC079140.1-201ENST00000508039 487 ntBASIC18.12■□□□□ 0.49
CLDN3O15551 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 AC004835.2-201ENST00000603762 682 ntBASIC18.12■□□□□ 0.49
CLDN3O15551 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN3O15551 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLDN3O15551 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.12■□□□□ 0.49
CLDN3O15551 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN3O15551 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.12■□□□□ 0.49
CLDN3O15551 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLDN3O15551 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CLDN3O15551 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN3O15551 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN3O15551 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN3O15551 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN3O15551 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN3O15551 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN3O15551 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.11■□□□□ 0.49
CLDN3O15551 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN3O15551 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN3O15551 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN3O15551 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN3O15551 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 HLA-A-202ENST00000376806 1854 ntBASIC18.11■□□□□ 0.49
CLDN3O15551 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN3O15551 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.1■□□□□ 0.49
CLDN3O15551 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN3O15551 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLDN3O15551 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms