Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
MSH4O15457 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 PMS2P2-201ENST00000425039 1128 ntBASIC18.56■□□□□ 0.56
MSH4O15457 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 SPDYE14P-201ENST00000442619 822 ntBASIC18.56■□□□□ 0.56
MSH4O15457 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.56■□□□□ 0.56
MSH4O15457 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH4O15457 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
MSH4O15457 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 PCDHA14-201ENST00000506751 2298 ntBASIC18.56■□□□□ 0.56
MSH4O15457 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH4O15457 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH4O15457 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH4O15457 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 ALG1L8P-201ENST00000533887 760 ntBASIC18.55■□□□□ 0.56
MSH4O15457 AC026150.2-201ENST00000564693 1156 ntBASIC18.55■□□□□ 0.56
MSH4O15457 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH4O15457 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 SPTSSB-204ENST00000617024 1292 ntBASIC18.55■□□□□ 0.56
MSH4O15457 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSH4O15457 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH4O15457 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH4O15457 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 AC005622.1-201ENST00000636801 1703 ntBASIC18.54■□□□□ 0.56
MSH4O15457 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH4O15457 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 ME2P1-201ENST00000426028 1970 ntBASIC18.54■□□□□ 0.56
MSH4O15457 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
MSH4O15457 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH4O15457 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.54■□□□□ 0.56
MSH4O15457 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.54■□□□□ 0.56
MSH4O15457 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH4O15457 AP001059.3-201ENST00000619053 235 ntBASIC18.54■□□□□ 0.56
MSH4O15457 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.54■□□□□ 0.56
MSH4O15457 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
MSH4O15457 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH4O15457 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
MSH4O15457 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
MSH4O15457 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH4O15457 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms