Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 AL009183.1-201ENST00000603760 355 ntBASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AC140658.5-201ENST00000438532 169 ntBASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AC109635.5-201ENST00000533593 962 ntBASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 PDPK2P-202ENST00000562415 1191 ntBASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AC020765.3-201ENST00000613051 740 ntBASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
AP4E1Q9UPM8 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 AC092919.2-201ENST00000623631 1645 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms