Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 NKILA-202ENST00000614771 2598 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 AC011676.5-201ENST00000624864 2660 ntBASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM39Q9HCM9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 AC004967.1-201ENST00000453589 447 ntBASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM39Q9HCM9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 AL691403.2-201ENST00000618460 490 ntBASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 AC134684.3-201ENST00000641758 218 ntBASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM39Q9HCM9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms