Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 KRT18P58-201ENST00000527480 1120 ntBASIC12.84□□□□□ -0.35
CCDC140Q96MF4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AC132872.1-201ENST00000566986 1195 ntBASIC12.84□□□□□ -0.35
CCDC140Q96MF4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AC244517.3-201ENST00000616254 1235 ntBASIC12.84□□□□□ -0.35
CCDC140Q96MF4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC140Q96MF4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.83□□□□□ -0.35
CCDC140Q96MF4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.83□□□□□ -0.35
CCDC140Q96MF4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 MIR574-201ENST00000385209 96 ntBASIC12.83□□□□□ -0.36
CCDC140Q96MF4 MIR940-201ENST00000401276 94 ntBASIC12.83□□□□□ -0.36
CCDC140Q96MF4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 AC074386.1-202ENST00000463561 864 ntBASIC12.83□□□□□ -0.36
CCDC140Q96MF4 AC120057.1-201ENST00000483947 663 ntBASIC12.83□□□□□ -0.36
CCDC140Q96MF4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC140Q96MF4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms