Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC061975.2-201ENST00000581722 295 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AF254983.2-201ENST00000612331 135 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC098935.1-201ENST00000446057 611 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TTC28Q96AY4 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 AC005332.7-201ENST00000614046 2005 ntBASIC16.53■□□□□ 0.24
TTC28Q96AY4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TTC28Q96AY4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 AL671710.1-201ENST00000610245 2349 ntBASIC16.52■□□□□ 0.24
TTC28Q96AY4 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TTC28Q96AY4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.52■□□□□ 0.24
TTC28Q96AY4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 TOP3BP1-201ENST00000420768 1380 ntBASIC16.52■□□□□ 0.23
TTC28Q96AY4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 AL133499.1-201ENST00000596207 608 ntBASIC16.52■□□□□ 0.23
TTC28Q96AY4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TTC28Q96AY4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.52■□□□□ 0.23
TTC28Q96AY4 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 HTR7P1-202ENST00000624664 4411 ntBASIC16.51■□□□□ 0.23
TTC28Q96AY4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TTC28Q96AY4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 AL596276.2-201ENST00000447525 331 ntBASIC16.51■□□□□ 0.23
TTC28Q96AY4 FAM86LP-201ENST00000478302 853 ntBASIC16.51■□□□□ 0.23
TTC28Q96AY4 COX5BP1-201ENST00000507622 393 ntBASIC16.51■□□□□ 0.23
TTC28Q96AY4 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.51■□□□□ 0.23
TTC28Q96AY4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms