Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC54Q8NEL0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 KRT18P35-201ENST00000510488 1269 ntBASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 FOSL1P1-201ENST00000511041 816 ntBASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 LINC01711-201ENST00000598340 967 ntBASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 GGTLC5P-201ENST00000617623 998 ntBASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 AC022188.1-201ENST00000620960 1664 ntBASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC54Q8NEL0 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 ARMC10P1-201ENST00000313754 855 ntBASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 AC087163.2-201ENST00000457299 853 ntBASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 POU5F1P6-201ENST00000466990 990 ntBASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 REXO1L3P-201ENST00000622202 1288 ntBASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms