Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SMC1BQ8NDV3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 UPF3AP2-201ENST00000457924 1132 ntBASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 AC244452.3-201ENST00000636814 210 ntBASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMC1BQ8NDV3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SMC1BQ8NDV3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AL662890.1-201ENST00000396818 632 ntBASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AC133539.2-201ENST00000604757 467 ntBASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 AC128714.1-201ENST00000637035 887 ntBASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC1BQ8NDV3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 RPS2P36-201ENST00000456516 831 ntBASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms