Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP41Q3LFD5 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 PCDHB17P-201ENST00000539533 2393 ntBASIC17.6■□□□□ 0.41
USP41Q3LFD5 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 AP002490.2-201ENST00000524791 560 ntBASIC17.6■□□□□ 0.41
USP41Q3LFD5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 AL138828.2-201ENST00000615812 383 ntBASIC17.6■□□□□ 0.41
USP41Q3LFD5 SPDYE12P-201ENST00000618416 771 ntBASIC17.6■□□□□ 0.41
USP41Q3LFD5 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 SNX33P1-201ENST00000592116 1762 ntBASIC17.6■□□□□ 0.41
USP41Q3LFD5 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.6■□□□□ 0.41
USP41Q3LFD5 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP41Q3LFD5 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 HLA-V-204ENST00000476601 1289 ntBASIC17.59■□□□□ 0.41
USP41Q3LFD5 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
USP41Q3LFD5 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 PP12613-201ENST00000424958 2230 ntBASIC17.59■□□□□ 0.41
USP41Q3LFD5 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP41Q3LFD5 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP41Q3LFD5 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
USP41Q3LFD5 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP41Q3LFD5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP41Q3LFD5 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP41Q3LFD5 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.58■□□□□ 0.4
USP41Q3LFD5 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms