Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.68■□□□□ 0.1
RFX3P48380 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.68■□□□□ 0.1
RFX3P48380 PAWRP1-201ENST00000451083 565 ntBASIC15.68■□□□□ 0.1
RFX3P48380 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
RFX3P48380 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
RFX3P48380 PGM5P2-202ENST00000637225 1043 ntBASIC15.68■□□□□ 0.1
RFX3P48380 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 AL645728.1-201ENST00000366221 2101 ntBASIC15.68■□□□□ 0.1
RFX3P48380 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX3P48380 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX3P48380 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RFX3P48380 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.68■□□□□ 0.1
RFX3P48380 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 AC002310.6-201ENST00000624451 1377 ntBASIC15.67■□□□□ 0.1
RFX3P48380 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.67■□□□□ 0.1
RFX3P48380 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.67■□□□□ 0.1
RFX3P48380 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 GGTLC5P-201ENST00000617623 998 ntBASIC15.67■□□□□ 0.1
RFX3P48380 AF228730.7-201ENST00000641842 219 ntBASIC15.67■□□□□ 0.1
RFX3P48380 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.67■□□□□ 0.1
RFX3P48380 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 AL391256.1-201ENST00000443260 1855 ntBASIC15.67■□□□□ 0.1
RFX3P48380 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 KRT8P49-201ENST00000604166 1432 ntBASIC15.67■□□□□ 0.1
RFX3P48380 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.67■□□□□ 0.1
RFX3P48380 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
RFX3P48380 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 HLA-A-201ENST00000376802 1334 ntBASIC15.67■□□□□ 0.1
RFX3P48380 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
RFX3P48380 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.67■□□□□ 0.1
RFX3P48380 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RFX3P48380 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
RFX3P48380 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RFX3P48380 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RFX3P48380 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFX3P48380 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.66■□□□□ 0.1
RFX3P48380 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.66■□□□□ 0.1
RFX3P48380 AC108073.2-201ENST00000464002 357 ntBASIC15.66■□□□□ 0.1
RFX3P48380 AC108751.1-201ENST00000490852 363 ntBASIC15.66■□□□□ 0.1
RFX3P48380 SLC25A6P2-201ENST00000497974 877 ntBASIC15.66■□□□□ 0.1
RFX3P48380 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms