Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.51■■□□□ 1.03
COL18A1P39060 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC21.51■■□□□ 1.03
COL18A1P39060 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC21.51■■□□□ 1.03
COL18A1P39060 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC21.51■■□□□ 1.03
COL18A1P39060 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL18A1P39060 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC21.51■■□□□ 1.03
COL18A1P39060 USB1-202ENST00000423271 1217 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 AC036164.1-201ENST00000570544 333 ntBASIC21.51■■□□□ 1.03
COL18A1P39060 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.51■■□□□ 1.03
COL18A1P39060 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC21.51■■□□□ 1.03
COL18A1P39060 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.51■■□□□ 1.03
COL18A1P39060 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL18A1P39060 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 AC093525.8-201ENST00000624099 1342 ntBASIC21.5■■□□□ 1.03
COL18A1P39060 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
COL18A1P39060 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 GRN-214ENST00000589265 1632 ntTSL 5 BASIC21.5■■□□□ 1.03
COL18A1P39060 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.5■■□□□ 1.03
COL18A1P39060 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 CSF2RBP1-201ENST00000447905 391 ntBASIC21.5■■□□□ 1.03
COL18A1P39060 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC21.5■■□□□ 1.03
COL18A1P39060 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC21.5■■□□□ 1.03
COL18A1P39060 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL18A1P39060 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL18A1P39060 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 DEK-201ENST00000244776 1441 ntTSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC21.49■■□□□ 1.03
COL18A1P39060 MPV17-206ENST00000402722 827 ntTSL 3 BASIC21.49■■□□□ 1.03
COL18A1P39060 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL18A1P39060 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL18A1P39060 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.49■■□□□ 1.03
COL18A1P39060 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC21.49■■□□□ 1.03
COL18A1P39060 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL18A1P39060 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL18A1P39060 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 TARDBPP1-201ENST00000442013 1203 ntBASIC21.48■■□□□ 1.03
COL18A1P39060 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC21.48■■□□□ 1.03
COL18A1P39060 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC21.48■■□□□ 1.03
COL18A1P39060 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC21.48■■□□□ 1.03
COL18A1P39060 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 AC068880.1-201ENST00000507289 2297 ntBASIC21.48■■□□□ 1.03
COL18A1P39060 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC21.48■■□□□ 1.03
COL18A1P39060 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC21.48■■□□□ 1.03
COL18A1P39060 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL18A1P39060 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC21.48■■□□□ 1.03
COL18A1P39060 ZNF767P-206ENST00000513792 565 ntBASIC21.48■■□□□ 1.03
COL18A1P39060 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
COL18A1P39060 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC21.48■■□□□ 1.03
COL18A1P39060 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
COL18A1P39060 TUBB1P2-201ENST00000422712 1306 ntBASIC21.48■■□□□ 1.03
COL18A1P39060 TUBB1P1-201ENST00000503144 1300 ntBASIC21.48■■□□□ 1.03
COL18A1P39060 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC21.47■■□□□ 1.03
COL18A1P39060 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.47■■□□□ 1.03
COL18A1P39060 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
COL18A1P39060 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
COL18A1P39060 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL18A1P39060 STX1A-203ENST00000395155 783 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms