Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN4AP35499 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN4AP35499 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN4AP35499 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SCN4AP35499 AC008687.7-202ENST00000637404 953 ntBASIC19.25■□□□□ 0.67
SCN4AP35499 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.25■□□□□ 0.67
SCN4AP35499 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SCN4AP35499 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN4AP35499 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SCN4AP35499 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SCN4AP35499 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.24■□□□□ 0.67
SCN4AP35499 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.24■□□□□ 0.67
SCN4AP35499 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.24■□□□□ 0.67
SCN4AP35499 TOMM22P5-201ENST00000416399 439 ntBASIC19.24■□□□□ 0.67
SCN4AP35499 NUS1P3-201ENST00000423502 862 ntBASIC19.24■□□□□ 0.67
SCN4AP35499 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
SCN4AP35499 MIR4321-201ENST00000592276 80 ntBASIC19.24■□□□□ 0.67
SCN4AP35499 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN4AP35499 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN4AP35499 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SCN4AP35499 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.23■□□□□ 0.67
SCN4AP35499 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.23■□□□□ 0.67
SCN4AP35499 AP001258.2-201ENST00000529891 490 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.23■□□□□ 0.67
SCN4AP35499 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 MSTO2P-201ENST00000314835 1709 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 AC138028.6-201ENST00000616106 1482 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 MTX1P1-201ENST00000440904 838 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.23■□□□□ 0.67
SCN4AP35499 RPS2P36-201ENST00000456516 831 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 UPF3AP2-201ENST00000457924 1132 ntBASIC19.23■□□□□ 0.67
SCN4AP35499 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SCN4AP35499 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.23■□□□□ 0.67
SCN4AP35499 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN4AP35499 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN4AP35499 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN4AP35499 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN4AP35499 KRT8P19-201ENST00000551916 1455 ntBASIC19.22■□□□□ 0.67
SCN4AP35499 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SCN4AP35499 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN4AP35499 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN4AP35499 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN4AP35499 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.22■□□□□ 0.67
SCN4AP35499 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.22■□□□□ 0.67
SCN4AP35499 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN4AP35499 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN4AP35499 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN4AP35499 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms