Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGA1P17096 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGA1P17096 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 AC087499.5-201ENST00000452760 1342 ntBASIC17.1■□□□□ 0.33
HMGA1P17096 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGA1P17096 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGA1P17096 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGA1P17096 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HMGA1P17096 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGA1P17096 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HMGA1P17096 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 AC015922.1-201ENST00000421102 1152 ntBASIC17.09■□□□□ 0.33
HMGA1P17096 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGA1P17096 AC190387.1-201ENST00000551683 408 ntBASIC17.09■□□□□ 0.33
HMGA1P17096 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGA1P17096 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGA1P17096 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGA1P17096 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGA1P17096 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HMGA1P17096 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HMGA1P17096 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGA1P17096 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
HMGA1P17096 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.08■□□□□ 0.33
HMGA1P17096 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.08■□□□□ 0.33
HMGA1P17096 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGA1P17096 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.08■□□□□ 0.33
HMGA1P17096 LINC01144-201ENST00000626198 1710 ntBASIC17.08■□□□□ 0.32
HMGA1P17096 AC005622.1-201ENST00000636801 1703 ntBASIC17.08■□□□□ 0.32
HMGA1P17096 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGA1P17096 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGA1P17096 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGA1P17096 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
HMGA1P17096 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGA1P17096 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGA1P17096 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGA1P17096 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGA1P17096 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGA1P17096 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGA1P17096 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGA1P17096 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.07■□□□□ 0.32
HMGA1P17096 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGA1P17096 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGA1P17096 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGA1P17096 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms