Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A1P12109 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A1P12109 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A1P12109 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A1P12109 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A1P12109 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A1P12109 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A1P12109 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A1P12109 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A1P12109 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.15■□□□□ 0.5
COL6A1P12109 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 AL355994.2-201ENST00000447882 704 ntBASIC18.15■□□□□ 0.5
COL6A1P12109 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.15■□□□□ 0.5
COL6A1P12109 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
COL6A1P12109 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 AC061975.2-201ENST00000581722 295 ntBASIC18.15■□□□□ 0.5
COL6A1P12109 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.15■□□□□ 0.5
COL6A1P12109 AC233724.13-201ENST00000598383 410 ntBASIC18.15■□□□□ 0.5
COL6A1P12109 MIR6069-201ENST00000620069 79 ntBASIC18.15■□□□□ 0.5
COL6A1P12109 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
COL6A1P12109 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A1P12109 AC018665.1-201ENST00000622927 1362 ntBASIC18.15■□□□□ 0.5
COL6A1P12109 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A1P12109 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A1P12109 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.14■□□□□ 0.5
COL6A1P12109 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL6A1P12109 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.14■□□□□ 0.5
COL6A1P12109 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 PDIA3P1-201ENST00000471856 1510 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
COL6A1P12109 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.14■□□□□ 0.49
COL6A1P12109 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.14■□□□□ 0.49
COL6A1P12109 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A1P12109 CTBP2P5-201ENST00000454986 1264 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.14■□□□□ 0.49
COL6A1P12109 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 AC124947.2-201ENST00000547118 1133 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A1P12109 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A1P12109 AC103810.3-201ENST00000583567 96 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A1P12109 AC026979.3-201ENST00000607315 403 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL6A1P12109 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A1P12109 HCG11-201ENST00000411553 5696 ntBASIC18.14■□□□□ 0.49
COL6A1P12109 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A1P12109 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL6A1P12109 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A1P12109 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A1P12109 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A1P12109 AC099336.1-201ENST00000417053 1171 ntBASIC18.13■□□□□ 0.49
COL6A1P12109 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A1P12109 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.13■□□□□ 0.49
COL6A1P12109 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A1P12109 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A1P12109 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms