Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 SPDYE9P-201ENST00000570642 692 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPDYE10P-202ENST00000612005 668 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPDYE8P-202ENST00000612377 668 ntBASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TMX2-CTNND1H3BSU7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 RNA5SP421-201ENST00000516864 134 ntBASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC015911.4-201ENST00000588022 1070 ntBASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL161645.1-201ENST00000622716 1255 ntBASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC007950.2-201ENST00000615045 2347 ntBASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TMX2-CTNND1H3BSU7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC005237.2-201ENST00000434368 219 ntBASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 TIMM8BP1-201ENST00000452384 211 ntBASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC093512.1-201ENST00000617969 520 ntBASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 AC026691.1-201ENST00000602502 2017 ntBASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TMX2-CTNND1H3BSU7 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TMX2-CTNND1H3BSU7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms