Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 FAM197Y8-203ENST00000450145 560 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 KRT18P56-201ENST00000507275 550 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 AC012640.2-201ENST00000561606 901 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 OR7E47P-204ENST00000575924 449 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 AC024909.3-201ENST00000611513 2257 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 AP002414.3-201ENST00000589352 1468 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 AL603832.2-201ENST00000566195 2125 ntBASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMCH1Q9UPQ0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 AL139384.1-201ENST00000612143 3047 ntBASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 EMBP1-201ENST00000458200 901 ntBASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 PGM5P2-202ENST00000637225 1043 ntBASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMCH1Q9UPQ0 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 REXO1L8P-201ENST00000604378 1897 ntBASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 AC132872.4-202ENST00000622924 2756 ntBASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMCH1Q9UPQ0 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 AL121912.1-201ENST00000603683 238 ntBASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 AC020765.3-201ENST00000613051 740 ntBASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.58■□□□□ 0.72
LIMCH1Q9UPQ0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMCH1Q9UPQ0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms