Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 TPM4P1-201ENST00000436100 807 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 AP001005.1-201ENST00000571755 1248 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 ACTL9-202ENST00000612068 1252 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 AC116407.3-201ENST00000623905 1129 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 GPAA1P2-202ENST00000606848 1787 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.91■□□□□ 0.3
LRRC40Q9H9A6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 MTHFR-217ENST00000641820 1569 ntBASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 AC005052.1-201ENST00000625181 2492 ntBASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 CXCL1P1-201ENST00000502804 216 ntBASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 RNA5SP419-201ENST00000515908 135 ntBASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LRRC40Q9H9A6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.89■□□□□ 0.3
LRRC40Q9H9A6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
LRRC40Q9H9A6 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.89■□□□□ 0.29
LRRC40Q9H9A6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms