Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 AC009154.2-201ENST00000621177 724 ntBASIC16.75■□□□□ 0.27
TRIM4Q9C037 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM4Q9C037 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM4Q9C037 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 DDX43P3-201ENST00000441064 443 ntBASIC16.74■□□□□ 0.27
TRIM4Q9C037 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 AC239800.4-201ENST00000603712 296 ntBASIC16.74■□□□□ 0.27
TRIM4Q9C037 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 FAM197Y3-203ENST00000618346 717 ntBASIC16.74■□□□□ 0.27
TRIM4Q9C037 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM4Q9C037 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM4Q9C037 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 KRT18P28-201ENST00000453838 1332 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 DNAJB3-201ENST00000446806 729 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 AC132008.2-207ENST00000454517 770 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AC112698.1-201ENST00000510299 916 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AC011840.4-201ENST00000578471 627 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 MIR5100-201ENST00000579544 119 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 BNIP3P18-201ENST00000593976 575 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AL596442.2-201ENST00000610240 980 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 AC104640.1-201ENST00000562617 2109 ntBASIC16.73■□□□□ 0.27
TRIM4Q9C037 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM4Q9C037 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM4Q9C037 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM4Q9C037 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM4Q9C037 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM4Q9C037 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM4Q9C037 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM4Q9C037 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM4Q9C037 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM4Q9C037 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms