Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 AL118508.1-201ENST00000613502 2345 ntBASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAIPQ9BWF2 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 FAM8A3P-201ENST00000427218 844 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 RBPMS2P1-201ENST00000437762 623 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 AP000842.3-202ENST00000569238 1080 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 AC005498.2-205ENST00000593218 784 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 TUBB8P12-201ENST00000308911 1335 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 TUBB7P-202ENST00000428444 1305 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 TUBB8P7-204ENST00000567960 1332 ntBASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
TRAIPQ9BWF2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 SPDYE14P-201ENST00000442619 822 ntBASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 BCRP1-201ENST00000444246 691 ntBASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 AC026150.2-201ENST00000564693 1156 ntBASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 AC092364.2-202ENST00000597012 1073 ntBASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAIPQ9BWF2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 TNRC18P3-201ENST00000441896 2691 ntBASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC027307.2-201ENST00000591252 911 ntBASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC013467.2-201ENST00000605472 835 ntBASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 AC016027.1-202ENST00000607927 1699 ntBASIC18.18■□□□□ 0.5
TRAIPQ9BWF2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms