Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 RPS2P28-201ENST00000314255 741 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AL031284.1-201ENST00000419297 478 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC079776.4-201ENST00000511039 504 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC105339.3-201ENST00000560043 636 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC005412.3-201ENST00000580309 715 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AC004790.2-201ENST00000623588 572 ntBASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HERPUD2Q9BSE4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 AC129492.6-201ENST00000611383 1305 ntBASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 GGTLC5P-201ENST00000617623 998 ntBASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 AC117500.6-201ENST00000624871 588 ntBASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HERPUD2Q9BSE4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.21■□□□□ 0.35
HERPUD2Q9BSE4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms