Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 AC080080.1-201ENST00000625121 2420 ntBASIC14.95□□□□□ -0.02
CPNE4Q96A23 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 HLA-J-202ENST00000469281 1241 ntBASIC14.95□□□□□ -0.02
CPNE4Q96A23 ALG1L5P-201ENST00000482043 771 ntBASIC14.95□□□□□ -0.02
CPNE4Q96A23 AC112482.1-201ENST00000492080 688 ntBASIC14.95□□□□□ -0.02
CPNE4Q96A23 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 ELL2P1-201ENST00000413990 1906 ntBASIC14.95□□□□□ -0.02
CPNE4Q96A23 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CPNE4Q96A23 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.95□□□□□ -0.02
CPNE4Q96A23 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 YBX1P5-201ENST00000509441 847 ntBASIC14.94□□□□□ -0.02
CPNE4Q96A23 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 FAM86C2P-203ENST00000528684 1004 ntBASIC14.94□□□□□ -0.02
CPNE4Q96A23 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.94□□□□□ -0.02
CPNE4Q96A23 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CPNE4Q96A23 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CPNE4Q96A23 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CPNE4Q96A23 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
CPNE4Q96A23 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CPNE4Q96A23 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CPNE4Q96A23 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CPNE4Q96A23 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CPNE4Q96A23 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CPNE4Q96A23 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CPNE4Q96A23 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
CPNE4Q96A23 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms