Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK3Q8IV63 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK3Q8IV63 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 AC002056.1-201ENST00000395613 760 ntBASIC16.22■□□□□ 0.19
VRK3Q8IV63 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 AC112191.1-201ENST00000523689 701 ntBASIC16.22■□□□□ 0.19
VRK3Q8IV63 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK3Q8IV63 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK3Q8IV63 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.21■□□□□ 0.19
VRK3Q8IV63 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 MTDHP5-201ENST00000598980 586 ntBASIC16.21■□□□□ 0.19
VRK3Q8IV63 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.21■□□□□ 0.19
VRK3Q8IV63 C20orf181-201ENST00000623918 480 ntBASIC16.21■□□□□ 0.19
VRK3Q8IV63 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
VRK3Q8IV63 AC006449.5-201ENST00000610658 2098 ntBASIC16.21■□□□□ 0.19
VRK3Q8IV63 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK3Q8IV63 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms