Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 HAUS4P1-201ENST00000406739 1145 ntBASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RRP7BP-205ENST00000566851 833 ntBASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 TMEM261P1-201ENST00000604899 340 ntBASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 AC020907.1-201ENST00000616460 1350 ntBASIC20.05■□□□□ 0.8
CCDC88AQ3V6T2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC88AQ3V6T2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AP002490.2-201ENST00000524791 560 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 MIR6869-201ENST00000619434 62 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AL139099.5-201ENST00000635274 300 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AL671710.1-201ENST00000610245 2349 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms