Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SF3A1Q15459 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
SF3A1Q15459 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.27■□□□□ 0.67
SF3A1Q15459 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.27■□□□□ 0.67
SF3A1Q15459 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SF3A1Q15459 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 AL391005.1-201ENST00000623953 2435 ntBASIC19.26■□□□□ 0.67
SF3A1Q15459 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.26■□□□□ 0.67
SF3A1Q15459 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 RPS2P1-201ENST00000434010 821 ntBASIC19.26■□□□□ 0.67
SF3A1Q15459 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.26■□□□□ 0.67
SF3A1Q15459 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 SLC25A6P2-201ENST00000497974 877 ntBASIC19.26■□□□□ 0.67
SF3A1Q15459 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
SF3A1Q15459 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 AL805961.1-202ENST00000641562 540 ntBASIC19.26■□□□□ 0.67
SF3A1Q15459 AF228730.7-201ENST00000641842 219 ntBASIC19.26■□□□□ 0.67
SF3A1Q15459 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SF3A1Q15459 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SF3A1Q15459 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.26■□□□□ 0.67
SF3A1Q15459 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SF3A1Q15459 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.25■□□□□ 0.67
SF3A1Q15459 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 SNX33P1-201ENST00000592116 1762 ntBASIC19.25■□□□□ 0.67
SF3A1Q15459 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 KRT18P27-201ENST00000427733 1299 ntBASIC19.25■□□□□ 0.67
SF3A1Q15459 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.25■□□□□ 0.67
SF3A1Q15459 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.25■□□□□ 0.67
SF3A1Q15459 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.25■□□□□ 0.67
SF3A1Q15459 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.25■□□□□ 0.67
SF3A1Q15459 AC006557.2-201ENST00000592985 1240 ntBASIC19.25■□□□□ 0.67
SF3A1Q15459 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SF3A1Q15459 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SF3A1Q15459 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC19.25■□□□□ 0.67
SF3A1Q15459 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SF3A1Q15459 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SF3A1Q15459 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
SF3A1Q15459 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 AC005052.1-201ENST00000625181 2492 ntBASIC19.24■□□□□ 0.67
SF3A1Q15459 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SF3A1Q15459 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms