Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SOX4Q06945 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SOX4Q06945 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX4Q06945 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.68■□□□□ 0.42
SOX4Q06945 AC097493.3-201ENST00000509725 367 ntBASIC17.68■□□□□ 0.42
SOX4Q06945 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.68■□□□□ 0.42
SOX4Q06945 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX4Q06945 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX4Q06945 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SOX4Q06945 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX4Q06945 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX4Q06945 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX4Q06945 GGT3P-204ENST00000453783 1664 ntBASIC17.67■□□□□ 0.42
SOX4Q06945 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX4Q06945 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
SOX4Q06945 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
SOX4Q06945 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX4Q06945 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX4Q06945 AC069120.2-201ENST00000524091 540 ntBASIC17.67■□□□□ 0.42
SOX4Q06945 BANF1P1-201ENST00000553684 263 ntBASIC17.67■□□□□ 0.42
SOX4Q06945 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.67■□□□□ 0.42
SOX4Q06945 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.67■□□□□ 0.42
SOX4Q06945 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX4Q06945 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.67■□□□□ 0.42
SOX4Q06945 AC007967.4-201ENST00000614700 386 ntBASIC17.67■□□□□ 0.42
SOX4Q06945 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
SOX4Q06945 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SOX4Q06945 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX4Q06945 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX4Q06945 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX4Q06945 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SOX4Q06945 AL158211.3-201ENST00000607385 239 ntBASIC17.66■□□□□ 0.42
SOX4Q06945 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 AL390754.1-201ENST00000619088 582 ntBASIC17.66■□□□□ 0.42
SOX4Q06945 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX4Q06945 PCGF3-213ENST00000620529 1899 ntBASIC17.66■□□□□ 0.42
SOX4Q06945 FLJ38576-201ENST00000623820 2459 ntBASIC17.66■□□□□ 0.42
SOX4Q06945 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX4Q06945 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX4Q06945 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX4Q06945 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX4Q06945 UGT1A2P-201ENST00000454886 866 ntBASIC17.65■□□□□ 0.42
SOX4Q06945 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX4Q06945 RNA5SP410-201ENST00000516285 106 ntBASIC17.65■□□□□ 0.42
SOX4Q06945 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms