Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.38■□□□□ 0.37
IRX4P78413 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
IRX4P78413 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
IRX4P78413 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
IRX4P78413 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
IRX4P78413 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
IRX4P78413 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 RPS15P9-201ENST00000494093 319 ntBASIC17.37■□□□□ 0.37
IRX4P78413 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 SPCS2P1-201ENST00000561636 679 ntBASIC17.37■□□□□ 0.37
IRX4P78413 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.37■□□□□ 0.37
IRX4P78413 AC008667.4-201ENST00000607370 168 ntBASIC17.37■□□□□ 0.37
IRX4P78413 AL139327.4-201ENST00000612362 153 ntBASIC17.37■□□□□ 0.37
IRX4P78413 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.37■□□□□ 0.37
IRX4P78413 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.37■□□□□ 0.37
IRX4P78413 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
IRX4P78413 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
IRX4P78413 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
IRX4P78413 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.36■□□□□ 0.37
IRX4P78413 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
IRX4P78413 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
IRX4P78413 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.36■□□□□ 0.37
IRX4P78413 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.36■□□□□ 0.37
IRX4P78413 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.36■□□□□ 0.37
IRX4P78413 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.36■□□□□ 0.37
IRX4P78413 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.36■□□□□ 0.37
IRX4P78413 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.36■□□□□ 0.37
IRX4P78413 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
IRX4P78413 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
IRX4P78413 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 AL162727.3-201ENST00000635661 2787 ntBASIC17.36■□□□□ 0.37
IRX4P78413 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.36■□□□□ 0.37
IRX4P78413 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.36■□□□□ 0.37
IRX4P78413 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
IRX4P78413 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
IRX4P78413 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms