Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH11P55287 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH11P55287 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CDH11P55287 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH11P55287 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
CDH11P55287 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CDH11P55287 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH11P55287 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH11P55287 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 AC018712.1-201ENST00000455767 687 ntBASIC15.31■□□□□ 0.04
CDH11P55287 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.31■□□□□ 0.04
CDH11P55287 RNPS1P1-201ENST00000507437 918 ntBASIC15.31■□□□□ 0.04
CDH11P55287 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH11P55287 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 AC148477.8-201ENST00000624298 468 ntBASIC15.31■□□□□ 0.04
CDH11P55287 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 AP005117.1-201ENST00000584346 1413 ntBASIC15.31■□□□□ 0.04
CDH11P55287 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 PAUPAR-201ENST00000630360 2965 ntBASIC15.31■□□□□ 0.04
CDH11P55287 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CDH11P55287 HYMAI-201ENST00000635591 3347 ntBASIC15.31■□□□□ 0.04
CDH11P55287 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 AC132938.5-201ENST00000624980 1813 ntBASIC15.31■□□□□ 0.04
CDH11P55287 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CDH11P55287 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH11P55287 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH11P55287 AC011270.2-201ENST00000624293 2550 ntBASIC15.31■□□□□ 0.04
CDH11P55287 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 FLJ16779-201ENST00000612722 7638 ntBASIC15.3■□□□□ 0.04
CDH11P55287 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 AC063926.3-201ENST00000624734 5658 ntBASIC15.3■□□□□ 0.04
CDH11P55287 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CDH11P55287 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH11P55287 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CDH11P55287 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH11P55287 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms