Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 AC113347.1-201ENST00000413321 391 ntBASIC13.89□□□□□ -0.19
HOXA1P49639 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 HOMER2P1-201ENST00000455653 964 ntBASIC13.89□□□□□ -0.19
HOXA1P49639 AC092647.4-201ENST00000457211 535 ntBASIC13.89□□□□□ -0.19
HOXA1P49639 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 AC093827.2-201ENST00000512654 315 ntBASIC13.89□□□□□ -0.19
HOXA1P49639 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 VENTXP5-201ENST00000523979 775 ntBASIC13.89□□□□□ -0.19
HOXA1P49639 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
HOXA1P49639 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.89□□□□□ -0.19
HOXA1P49639 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.89□□□□□ -0.19
HOXA1P49639 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
HOXA1P49639 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.89□□□□□ -0.19
HOXA1P49639 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HOXA1P49639 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.89□□□□□ -0.19
HOXA1P49639 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13.89□□□□□ -0.19
HOXA1P49639 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 HBZP1-201ENST00000354915 429 ntBASIC13.88□□□□□ -0.19
HOXA1P49639 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 SLC25A1P3-201ENST00000395415 828 ntBASIC13.88□□□□□ -0.19
HOXA1P49639 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC13.88□□□□□ -0.19
HOXA1P49639 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXA1P49639 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.88□□□□□ -0.19
HOXA1P49639 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.88□□□□□ -0.19
HOXA1P49639 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXA1P49639 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.88□□□□□ -0.19
HOXA1P49639 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC13.88□□□□□ -0.19
HOXA1P49639 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXA1P49639 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.88□□□□□ -0.19
HOXA1P49639 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 AC005089.1-201ENST00000619486 2241 ntBASIC13.88□□□□□ -0.19
HOXA1P49639 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HOXA1P49639 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXA1P49639 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXA1P49639 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 AC022532.1-201ENST00000624563 1728 ntBASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms