Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LHX1P48742 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LHX1P48742 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LHX1P48742 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.56■□□□□ 0.4
LHX1P48742 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.56■□□□□ 0.4
LHX1P48742 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.56■□□□□ 0.4
LHX1P48742 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LHX1P48742 ALG1L8P-201ENST00000533887 760 ntBASIC17.56■□□□□ 0.4
LHX1P48742 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX1P48742 AC027796.2-201ENST00000575326 344 ntBASIC17.56■□□□□ 0.4
LHX1P48742 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX1P48742 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.56■□□□□ 0.4
LHX1P48742 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.56■□□□□ 0.4
LHX1P48742 AC015911.4-201ENST00000588022 1070 ntBASIC17.56■□□□□ 0.4
LHX1P48742 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.56■□□□□ 0.4
LHX1P48742 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LHX1P48742 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.55■□□□□ 0.4
LHX1P48742 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX1P48742 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX1P48742 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.55■□□□□ 0.4
LHX1P48742 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.55■□□□□ 0.4
LHX1P48742 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 RFPL4AP1-201ENST00000530883 850 ntBASIC17.55■□□□□ 0.4
LHX1P48742 AC026150.2-201ENST00000564693 1156 ntBASIC17.55■□□□□ 0.4
LHX1P48742 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.55■□□□□ 0.4
LHX1P48742 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 SPTSSB-204ENST00000617024 1292 ntBASIC17.55■□□□□ 0.4
LHX1P48742 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.55■□□□□ 0.4
LHX1P48742 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX1P48742 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 AC022211.2-201ENST00000585075 2527 ntBASIC17.55■□□□□ 0.4
LHX1P48742 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.55■□□□□ 0.4
LHX1P48742 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LHX1P48742 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
LHX1P48742 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LHX1P48742 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 AC106886.4-201ENST00000623557 2502 ntBASIC17.54■□□□□ 0.4
LHX1P48742 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
LHX1P48742 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.54■□□□□ 0.4
LHX1P48742 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 SPDYE7P-202ENST00000420373 878 ntBASIC17.54■□□□□ 0.4
LHX1P48742 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 SPDYE14P-201ENST00000442619 822 ntBASIC17.54■□□□□ 0.4
LHX1P48742 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.54■□□□□ 0.4
LHX1P48742 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 AC098859.1-201ENST00000502915 1238 ntBASIC17.54■□□□□ 0.4
LHX1P48742 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.54■□□□□ 0.4
LHX1P48742 AC069262.1-201ENST00000539058 672 ntBASIC17.54■□□□□ 0.4
LHX1P48742 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.54■□□□□ 0.4
LHX1P48742 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LHX1P48742 LINC01144-201ENST00000626198 1710 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms