Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.26■□□□□ 0.35
PTPN9P43378 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PTPN9P43378 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PTPN9P43378 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CYP2T1P-202ENST00000641596 2535 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN9P43378 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 MTHFR-217ENST00000641820 1569 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 WASH6P-202ENST00000359512 1437 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN9P43378 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 KRT18P34-201ENST00000488218 1270 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PTPN9P43378 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 AC099522.2-201ENST00000607001 744 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.25■□□□□ 0.35
PTPN9P43378 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PTPN9P43378 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN9P43378 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN9P43378 AC016027.1-202ENST00000607927 1699 ntBASIC17.25■□□□□ 0.35
PTPN9P43378 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.25■□□□□ 0.35
PTPN9P43378 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN9P43378 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 PMS2P7-201ENST00000506558 1336 ntBASIC17.24■□□□□ 0.35
PTPN9P43378 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.24■□□□□ 0.35
PTPN9P43378 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.24■□□□□ 0.35
PTPN9P43378 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.24■□□□□ 0.35
PTPN9P43378 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.24■□□□□ 0.35
PTPN9P43378 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.24■□□□□ 0.35
PTPN9P43378 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PTPN9P43378 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
PTPN9P43378 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN9P43378 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PTPN9P43378 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN9P43378 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN9P43378 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN9P43378 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms