Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.68■□□□□ 0.58
CIITAP33076 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.68■□□□□ 0.58
CIITAP33076 SLC25A39P2-201ENST00000537614 270 ntBASIC18.68■□□□□ 0.58
CIITAP33076 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.68■□□□□ 0.58
CIITAP33076 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.68■□□□□ 0.58
CIITAP33076 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.68■□□□□ 0.58
CIITAP33076 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.68■□□□□ 0.58
CIITAP33076 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.68■□□□□ 0.58
CIITAP33076 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CIITAP33076 AC092171.3-201ENST00000610122 2651 ntBASIC18.67■□□□□ 0.58
CIITAP33076 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.67■□□□□ 0.58
CIITAP33076 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CIITAP33076 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CIITAP33076 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 UXT-AS1-201ENST00000590504 1525 ntBASIC18.66■□□□□ 0.58
CIITAP33076 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CIITAP33076 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.66■□□□□ 0.58
CIITAP33076 TSEN15P1-201ENST00000423257 515 ntBASIC18.66■□□□□ 0.58
CIITAP33076 KRT18P32-201ENST00000424695 1287 ntBASIC18.66■□□□□ 0.58
CIITAP33076 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.66■□□□□ 0.58
CIITAP33076 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.66■□□□□ 0.58
CIITAP33076 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.66■□□□□ 0.58
CIITAP33076 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.66■□□□□ 0.58
CIITAP33076 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CIITAP33076 KRT18P28-201ENST00000453838 1332 ntBASIC18.66■□□□□ 0.58
CIITAP33076 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CIITAP33076 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CIITAP33076 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CIITAP33076 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CIITAP33076 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.65■□□□□ 0.58
CIITAP33076 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CIITAP33076 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms