Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.72■□□□□ 0.11
COL5A1P20908 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.72■□□□□ 0.11
COL5A1P20908 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.72■□□□□ 0.11
COL5A1P20908 AC084346.2-201ENST00000607097 949 ntBASIC15.72■□□□□ 0.11
COL5A1P20908 WFDC1-204ENST00000613603 549 ntBASIC15.72■□□□□ 0.11
COL5A1P20908 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
COL5A1P20908 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.72■□□□□ 0.11
COL5A1P20908 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL5A1P20908 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL5A1P20908 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.71■□□□□ 0.11
COL5A1P20908 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
COL5A1P20908 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.71■□□□□ 0.11
COL5A1P20908 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.71■□□□□ 0.11
COL5A1P20908 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.71■□□□□ 0.11
COL5A1P20908 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.71■□□□□ 0.11
COL5A1P20908 AC074044.1-201ENST00000609673 707 ntBASIC15.71■□□□□ 0.11
COL5A1P20908 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL5A1P20908 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.71■□□□□ 0.11
COL5A1P20908 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.71■□□□□ 0.11
COL5A1P20908 AC092068.3-201ENST00000587894 2016 ntBASIC15.71■□□□□ 0.11
COL5A1P20908 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL5A1P20908 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL5A1P20908 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL5A1P20908 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.71■□□□□ 0.1
COL5A1P20908 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.71■□□□□ 0.1
COL5A1P20908 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL5A1P20908 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
COL5A1P20908 AC022210.1-201ENST00000449856 793 ntBASIC15.71■□□□□ 0.1
COL5A1P20908 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.71■□□□□ 0.1
COL5A1P20908 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.71■□□□□ 0.1
COL5A1P20908 TMEM261P1-201ENST00000604899 340 ntBASIC15.71■□□□□ 0.1
COL5A1P20908 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.71■□□□□ 0.1
COL5A1P20908 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.71■□□□□ 0.1
COL5A1P20908 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.71■□□□□ 0.1
COL5A1P20908 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL5A1P20908 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 AC005915.1-201ENST00000624912 2018 ntBASIC15.7■□□□□ 0.1
COL5A1P20908 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.7■□□□□ 0.1
COL5A1P20908 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.7■□□□□ 0.1
COL5A1P20908 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.7■□□□□ 0.1
COL5A1P20908 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.7■□□□□ 0.1
COL5A1P20908 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.7■□□□□ 0.1
COL5A1P20908 MIR6799-201ENST00000620297 69 ntBASIC15.7■□□□□ 0.1
COL5A1P20908 COX11-210ENST00000639671 696 ntBASIC15.7■□□□□ 0.1
COL5A1P20908 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
COL5A1P20908 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.7■□□□□ 0.1
COL5A1P20908 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL5A1P20908 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL5A1P20908 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.69■□□□□ 0.1
COL5A1P20908 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL5A1P20908 GGT4P-201ENST00000623672 1708 ntBASIC15.69■□□□□ 0.1
COL5A1P20908 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
COL5A1P20908 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms