Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LDLRP01130 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.16■□□□□ 0.18
LDLRP01130 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.16■□□□□ 0.18
LDLRP01130 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.16■□□□□ 0.18
LDLRP01130 AC021087.4-201ENST00000563761 564 ntBASIC16.16■□□□□ 0.18
LDLRP01130 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 MIR3197-201ENST00000582241 73 ntBASIC16.16■□□□□ 0.18
LDLRP01130 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LDLRP01130 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.16■□□□□ 0.18
LDLRP01130 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.16■□□□□ 0.18
LDLRP01130 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 AL513477.1-201ENST00000602865 2407 ntBASIC16.16■□□□□ 0.18
LDLRP01130 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDLRP01130 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 PAUPAR-201ENST00000630360 2965 ntBASIC16.15■□□□□ 0.18
LDLRP01130 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 AC092910.1-201ENST00000482027 1129 ntBASIC16.15■□□□□ 0.18
LDLRP01130 RNA5SP415-201ENST00000517246 115 ntBASIC16.15■□□□□ 0.18
LDLRP01130 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.15■□□□□ 0.18
LDLRP01130 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LDLRP01130 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.15■□□□□ 0.18
LDLRP01130 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LDLRP01130 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
LDLRP01130 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.14■□□□□ 0.17
LDLRP01130 RPS2P1-201ENST00000434010 821 ntBASIC16.14■□□□□ 0.17
LDLRP01130 DNAJB3-202ENST00000449667 1266 ntBASIC16.14■□□□□ 0.17
LDLRP01130 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
LDLRP01130 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.14■□□□□ 0.17
LDLRP01130 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.14■□□□□ 0.17
LDLRP01130 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDLRP01130 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms