Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 AC087481.3-201ENST00000602886 1894 ntBASIC16.68■□□□□ 0.26
SHOX2O60902 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.68■□□□□ 0.26
SHOX2O60902 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 AC009947.2-201ENST00000444014 672 ntBASIC16.68■□□□□ 0.26
SHOX2O60902 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.68■□□□□ 0.26
SHOX2O60902 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.68■□□□□ 0.26
SHOX2O60902 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.68■□□□□ 0.26
SHOX2O60902 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 AC091951.1-201ENST00000512854 2465 ntBASIC16.68■□□□□ 0.26
SHOX2O60902 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHOX2O60902 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 AC004817.3-201ENST00000602957 2129 ntBASIC16.67■□□□□ 0.26
SHOX2O60902 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.67■□□□□ 0.26
SHOX2O60902 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.67■□□□□ 0.26
SHOX2O60902 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.67■□□□□ 0.26
SHOX2O60902 AC122714.2-201ENST00000502787 707 ntBASIC16.67■□□□□ 0.26
SHOX2O60902 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 FITM1-202ENST00000559294 800 ntBASIC16.67■□□□□ 0.26
SHOX2O60902 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.67■□□□□ 0.26
SHOX2O60902 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.67■□□□□ 0.26
SHOX2O60902 AC116562.4-202ENST00000641738 218 ntBASIC16.67■□□□□ 0.26
SHOX2O60902 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SHOX2O60902 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHOX2O60902 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.67■□□□□ 0.26
SHOX2O60902 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.67■□□□□ 0.26
SHOX2O60902 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SHOX2O60902 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SHOX2O60902 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.66■□□□□ 0.26
SHOX2O60902 AC008550.1-201ENST00000511500 884 ntBASIC16.66■□□□□ 0.26
SHOX2O60902 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SHOX2O60902 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 PGM5P2-202ENST00000637225 1043 ntBASIC16.66■□□□□ 0.26
SHOX2O60902 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
SHOX2O60902 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHOX2O60902 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms