Protein–RNA interactions for Protein: O43295

SRGAP3, SLIT-ROBO Rho GTPase-activating protein 3, humanhuman

Predictions only

Length 1,099 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3O43295 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.61■□□□□ 0.89
SRGAP3O43295 AL138918.1-201ENST00000568306 659 ntBASIC20.61■□□□□ 0.89
SRGAP3O43295 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.61■□□□□ 0.89
SRGAP3O43295 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.61■□□□□ 0.89
SRGAP3O43295 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SRGAP3O43295 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.61■□□□□ 0.89
SRGAP3O43295 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.61■□□□□ 0.89
SRGAP3O43295 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.61■□□□□ 0.89
SRGAP3O43295 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SRGAP3O43295 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 AC005052.1-201ENST00000625181 2492 ntBASIC20.6■□□□□ 0.89
SRGAP3O43295 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 CNN2P11-201ENST00000429351 262 ntBASIC20.6■□□□□ 0.89
SRGAP3O43295 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AP000344.2-201ENST00000512987 629 ntBASIC20.6■□□□□ 0.89
SRGAP3O43295 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 AP001160.2-201ENST00000596071 487 ntBASIC20.6■□□□□ 0.89
SRGAP3O43295 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.6■□□□□ 0.89
SRGAP3O43295 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SRGAP3O43295 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 ALOX12P2-203ENST00000570921 1945 ntBASIC20.6■□□□□ 0.89
SRGAP3O43295 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
SRGAP3O43295 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.6■□□□□ 0.89
SRGAP3O43295 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SRGAP3O43295 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.59■□□□□ 0.89
SRGAP3O43295 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.59■□□□□ 0.89
SRGAP3O43295 LINC01225-203ENST00000563550 1244 ntBASIC20.59■□□□□ 0.89
SRGAP3O43295 SNHG9-202ENST00000564014 471 ntBASIC20.59■□□□□ 0.89
SRGAP3O43295 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SRGAP3O43295 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 AC020765.3-201ENST00000613051 740 ntBASIC20.59■□□□□ 0.89
SRGAP3O43295 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.59■□□□□ 0.89
SRGAP3O43295 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.59■□□□□ 0.89
SRGAP3O43295 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SRGAP3O43295 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.59■□□□□ 0.89
SRGAP3O43295 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SRGAP3O43295 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 PCGF3-213ENST00000620529 1899 ntBASIC20.58■□□□□ 0.89
SRGAP3O43295 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
SRGAP3O43295 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
SRGAP3O43295 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.58■□□□□ 0.89
SRGAP3O43295 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.58■□□□□ 0.89
SRGAP3O43295 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SRGAP3O43295 AL592309.1-201ENST00000443127 649 ntBASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms