Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRIM38O00635 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.79■□□□□ 0.28
TRIM38O00635 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM38O00635 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM38O00635 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM38O00635 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM38O00635 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM38O00635 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
TRIM38O00635 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 AC026691.1-201ENST00000602502 2017 ntBASIC16.79■□□□□ 0.28
TRIM38O00635 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM38O00635 AL135999.2-201ENST00000622438 1686 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 AC092919.2-201ENST00000623631 1645 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.78■□□□□ 0.28
TRIM38O00635 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 AC004461.1-201ENST00000412461 403 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM38O00635 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM38O00635 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.78■□□□□ 0.28
TRIM38O00635 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 AC068137.2-201ENST00000605408 478 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM38O00635 AC105339.1-204ENST00000636249 355 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 PCDHA1-201ENST00000378133 2726 ntBASIC16.78■□□□□ 0.28
TRIM38O00635 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM38O00635 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM38O00635 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM38O00635 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
TRIM38O00635 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 AC046185.3-201ENST00000623228 1824 ntBASIC16.77■□□□□ 0.28
TRIM38O00635 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM38O00635 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM38O00635 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM38O00635 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM38O00635 MIR770-201ENST00000390219 98 ntBASIC16.77■□□□□ 0.28
TRIM38O00635 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
TRIM38O00635 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM38O00635 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM38O00635 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM38O00635 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM38O00635 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM38O00635 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM38O00635 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM38O00635 AC004835.2-201ENST00000603762 682 ntBASIC16.77■□□□□ 0.28
TRIM38O00635 ACTL9-202ENST00000612068 1252 ntBASIC16.77■□□□□ 0.28
TRIM38O00635 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM38O00635 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM38O00635 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM38O00635 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms