Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 RNU1-129P-201ENST00000384064 167 ntBASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 AC107890.1-201ENST00000422478 521 ntBASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 GPS2P2-201ENST00000430745 888 ntBASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 U1.21-201ENST00000580816 167 ntBASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 AC008267.7-201ENST00000624570 1194 ntBASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SSX2IPQ9Y2D8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 PCDHA12-202ENST00000613593 2588 ntBASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AC140878.1-201ENST00000565277 250 ntBASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 AL021920.2-201ENST00000624828 1351 ntBASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SSX2IPQ9Y2D8 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 MIR943-201ENST00000401286 94 ntBASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 AC125807.1-201ENST00000483097 614 ntBASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 AC026150.2-201ENST00000564693 1156 ntBASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms