Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 HNRNPDP1-201ENST00000439535 754 ntBASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 POU5F1P6-201ENST00000466990 990 ntBASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 AC105339.3-201ENST00000560043 636 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 AL356488.2-201ENST00000602755 427 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 MIR1199-201ENST00000621445 119 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 TP73-AS1-207ENST00000624167 988 ntBASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMCH1Q9UPQ0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 AC018712.1-201ENST00000455767 687 ntBASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 AC010654.1-201ENST00000615722 808 ntBASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMCH1Q9UPQ0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms