Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AC142381.1-201ENST00000426099 345 ntBASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AL645939.2-201ENST00000427340 991 ntBASIC17.55■□□□□ 0.4
CDH9Q9ULB4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDH9Q9ULB4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 HLA-A-202ENST00000376806 1854 ntBASIC17.54■□□□□ 0.4
CDH9Q9ULB4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 AP001059.3-201ENST00000619053 235 ntBASIC17.54■□□□□ 0.4
CDH9Q9ULB4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH9Q9ULB4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AC022211.2-201ENST00000585075 2527 ntBASIC17.53■□□□□ 0.4
CDH9Q9ULB4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AL512356.2-201ENST00000546955 174 ntBASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CDH9Q9ULB4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms